LIBRARY UPDATE: Added ols-dialog version 3.3.2 as a dependency.
LIBRARY UPDATE: Updated utilities to version 4.11.4.
BUG FIX: Fixed a bug that resulted in all keys released when the PSM table had focus resulted in the spectrum annotation disappearing.
esimsa2D
>smpd -install >mpiexec -remove
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From the tool's directory, double-click the jar file, e.g.
Changes in PeptideShaker 1.14.0 (December 4. 2016):
recal2
Everett et al. recently reported on a statistical bias that arises in the target-decoy approach to false discovery rate estimation in two-pass proteomics search strategies as exemplified by X!Tandem. This bias can cause serious underestimation of the false discovery rate. We argue here that the "unbiased" solution proposed by Everett et al., however, is also biased and under certain circumstances can also result in a serious underestimate of the FDR, especially at the protein level.
Step 2. Download the macOS High Sierra Installer from the Mac App Store
FEATURE IMPROVEMENT: Improved the names of the plots in the Validation tab and updated the help text accordingly.
LIBRARY UPDATE: Updated utilities to version 4.12.11.
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